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dissertation/thesis 2008
Determining Suitable Wildlife Crossing Locations Across a Southern California Interstate
Lead author: Philip Gibbons
The Santa Ana?Palomar Mountain Linkage (SAPML) represents a wildlife corridor which connects the Palomar mountain range and the Santa Ana mountain range located in southern California. The linkage provides connectivity for a variety of species including mountain lions (Felis concolor). Interstate 15 (I-15), running north and south through the linkage, along with urban and agricultural development have created a significant chokepoint for wildlife movement in the middle of the corridor. Wildlife crossing structures provide a viable means for wildlife to effectively cross a road barrier. Research contends that wildlife crossing structures should be placed along an animal?s natural route of travel. Therefore, the purpose of this research is to determine suitable wildlife crossing locations across I-15 based upon predicted movement routes for mountain lions within the SAPML Choke-Point. Knowledge of wildlife crossing locations will help to enhance the connectivity of the SAPML. The following three research objectives are examined: (i) the validity of a least-cost path (LCP) analysis to determine potential movement routes and interstate crossing locations for mountain lions, (ii) the identification of suitable wildlife crossing locations along I-15 within the SAPML Choke-Point, and (iii) the influence of future development on the effectiveness of wildlife crossing locations within the choke-point. The results indicate that an LCP analysis can significantly predict movement routes and interstate crossing locations for mountain lions. Wildlife crossing locations were determined along I-15 within the SAPML Choke-Point. These crossing locations coincide with drainage infrastructure which exist underneath the interstate and may be able to be reconstructed to provide feasible crossing structures for wildlife. Lastly, future development within the choke-point will disturb wildlife movement and diminish the effectiveness of wildlife crossing locations along I-15. Areas critical for connectivity have been identified for conservation.

journal article 2003
Landscape-level connectivity in coastal Southern California, USA, as assessed through carnivore habitat suitability
Lead author: Richard Hunter
Although the fragmentation of the natural landscape of coastal southern California, USA, is accelerating, large-scale assessments of regional connectivity are lacking. Because of their large area requirements and long dispersal movements, mammalian carnivores can be effective focal species to use when evaluating landscape-level connectivity. Our goal was to make an initial assessment of the extent of landscape-level connectivity in coastal southern California using mountain lions (Fe/is concolor [Linnaeus]) and bobcats (Felis rufus [Shreber]) as focal species. We first characterized habitat preferences for mountain lions and bobcats from previously derived habitat relationship models for these species; the resulting maps provided a coarse view of habitat preferences for use at regional scales. We then constructed GIS models to evaluate the disturbance impact of roadways and development, major determinants of carnivore distribution and abundance in the south coast region. Finally, we combined the habitat relationship models with the disturbance impact models to characterize habitat connectivity for mountain lions and bobcats in the ecoregion. Habitat connectivity in the ecoregion appeared higher for bobcats than for mountain lions due in part to higher habitat suitability for bobcats in coastal lowland areas. Our models suggest that much of the key carnivore habitat in the coastal southern California is at risk; over 80% of high suitability habitat and over 90% of medium suitability habitat for carnivores is found in the least protected land management classes. Overall, these models allow for (I) identification of core habitat blocks for carnivores and key landscape connections between core areas, (2) evaluation of the level of protection of these areas, and (3) a regional framework within which to develop and coordinate local management and conservation plans.

journal article 2008
Relationships between human disturbance and wildlife land use in urban habitat fragments
Lead author: Lisa Markovchick-Nicholls
Habitat remnants in urbanized areas typically conserve biodiversity and serve the recreation and urban open-space needs of human populations. Nevertheless, these goals can be in conflict if human activity negatively affects wildlife. Hence, when considering habitat remnants as conservation refuges it is crucial to understand how human activities and land uses affect wildlife use of those and adjacent areas.We used tracking data (animal tracks and den or bed sites) on 10 animal species and information on human activity and environmental factors associated with anthropogenic disturbance in 12 habitat fragments across San Diego County, California, to examine the relationships among habitat fragment characteristics, human activity, and wildlife presence. There were no significant correlations of species presence and abundance with percent plant cover for all species or with different land-use intensities for all species, except the opossum (Didelphis virginiana), which preferred areas with intensive development. Woodrats (Neotoma spp.) and cougars (Puma concolor) were associated significantly and positively and significantly and negatively, respectively, with the presence of horses. Raccoons (Procyon lotor) and coyotes (Canis latrans) were associated significantly and negatively and significantly and positively, respectively, with plant bulk and permanence. Cougars and gray foxes (Urocyon cinereoargenteus) were negatively associated with the presence of roads. Roadrunners (Geococcyx californianus) were positively associated with litter. The only species that had no significant correlations with any of the environmental variables were black-tailed jackrabbits (Lepus californicus) and mule deer (Odocoileus hemionus). Bobcat tracks were observed more often than gray foxes in the study area and bobcats correlated significantly only with water availability, contrasting with results from other studies. Our results appear to indicate that maintenance of habitat fragments in urban areas is of conservation benefit to some animal species, despite human activity and disturbance, as long as the fragments are large.

journal article 2015
Survival and Mortality of Pumas (Puma concolor) in a Fragmented, Urbanizing Landscape
Lead author: Winston Vickers
Wide-ranging large carnivores pose myriad challenges for conservation, especially in highly fragmented landscapes. Over a 13-year period, we combined monitoring of radio collared pumas (Puma concolor) with complementary multi-generational genetic analyses

journal article 2017
A single migrant enhances the genetic diversity of an inbred population
Lead author: Walter Boyce
Migration is essential for maintaining genetic diversity among populations, and pumas (Puma concolor) provide an excellent model for studying the genetic impacts of migrants on populations isolated by increasing human development. In densely populated southern California, USA, puma populations on the east and west side of interstate highway 15 (I-15) have become fragmented into a small inbred population on the west side (Santa Ana Mountains) and a relatively larger, more diverse population on the east side (Eastern Peninsular Range). From 146 sampled pumas, genetic analyses indicate seven pumas crossed I-15 over the last 15 years, including four males from west to east, and three males from east to west. However, only a single migrant (named M86) was detected to have produced offspring and contribute to gene flow across the I-15 barrier. Prior to the M86 migration, the Santa Ana population exhibited inbreeding and had significantly lower genetic diversity than the Eastern Peninsular Range population. After M86 emigrated, he sired 11 offspring with Santa Ana females, decreasing inbreeding measures and raising heterozygosity to levels similar to pumas in the Eastern Peninsular Range. The emigration of M86 also introduced new alleles into the Santa Ana population, although allelic richness still remained significantly lower than the Eastern Peninsular population. Our results clearly show the benefit of a single migrant to the genetics of a small, isolated population. However, ongoing development and habitat loss on both sides of I-15 will increasingly strengthen the barrier to successful migration. Further monitoring, and potential human intervention, including minimizing development effects on connectivity, adding or improving freeway crossing structures, or animal translocation, may be needed to ensure adequate gene flow and long-term persistence of the Santa Ana puma population.

journal article 2017
Multi-level, multi-scale resource selection functions and resistance surfaces for conservation planning, Pumas as a case study.pdf
Lead author: Katherine Zeller
The importance of examining multiple hierarchical levels when modeling resource use for wildlife has been acknowledged for decades. Multi-level resource selection functions have recently been promoted as a method to synthesize resource use across nested organizational levels into a single predictive surface. Analyzing multiple scales of selection within each hierarchical level further strengthens multi-level resource selection functions. We extend this multi-level, multi-scale framework to modeling resistance for wildlife by combining multi-scale resistance surfaces from two data types, genetic and movement. Resistance estimation has typically been conducted with one of these data types, or compared between the two. However, we contend it is not an either/or issue and that resistance may be bettermodeled using a combination of resistance surfaces that represent processes at different hierarchical levels. Resistance surfaces estimated from genetic data characterize temporally broad-scale dispersal and successful breeding over generations, whereas resistance surfaces estimated from movement data represent fine-scale travel and contextualized movement decisions. We used telemetry and genetic data from a long-term study on pumas (Puma concolor) in a highly developed landscape in southern California to develop a multilevel, multi-scale resource selection function and a multi-level, multi-scale resistance surface. We used these multi-level, multi-scale surfaces to identify resource use patches and resistant kernel corridors. Across levels, we found puma avoided urban, agricultural areas, and roads and preferred riparian areas and more rugged terrain. For other landscape features, selection differed among levels, as did the scales of selection for each feature. With these results, we developed a conservation plan for one of the most isolated puma populations in the U.S. Our approach captured a wide spectrum of ecological relationships for a population, resulted in effective conservation planning, and can be readily applied to other wildlife species.

other 2020
Appendix H
Site maps of survey locations in 2020 displaying priority groups

powerpoint presentation 2014
Mountain Lion Connectivity in San Diego County
Lead author: Winston Vickers
Presentation for the Connectivity Strategic Plan for Western San Diego County Science Session – July 1, 2014

powerpoint presentation 2022
UCD Wildlife Health Center Mountain Lion Studies - 2022 Update
Lead author: Winston Vickers
Presentation at the December 14, 2022 SDMMP Management and Monitoring Coordination Annual End-of-Year Meeting.

powerpoint presentation 2021
Update on the UC Davis Southern California Mountain Lion Project, as well as Results of Recent Research Elsewhere in the State
Lead author: Winston Vickers
Presentation at the January 27,2021 SDMMP Management and Monitoring Coordination Meeting.

powerpoint presentation 2019
Relationship between habitat and genetics in a wide-ranging large carnivore
Lead author: Justin Dellinger

protocol
Mountain Lion Connectivity 2017
Methods include: trapping and GPS collaring mountain lions, DNA analysis, movement modeling, and defining mountain lion movement

recording 2013
1.06. University of California Davis (UC Davis) Southern California Mountain Lion Project: Studying how humans, other wildlife, and disease affect conservation of this species in an urbanizing landscape
Lead author: Winston Vickers
This 2013 Wildland Fire Workshop focused on Southern California and landscape level fires occurring in the last decade. This workshop brought together land managers, researchers, and fire management personnel to continue the discussions on the topic of wildland fire impacts to at risk natural resources. The purpose of the workshop was to present, collaborate, and plan wildland fire-related research, management, responses, and future recovery as it applies to the “at risk” natural resources of San Diego County.

recording 2021
Recording - January 2021 Management and Monitoring Coordination Meeting
Lead author: Winston Vickers
Recording for the January 27, 2021 Management and Monitoring Coordination Meeting. Dr. Winston Vickers shares an "Update on the UC Davis Southern California Mountain Lion Project, as well as Results of Recent Research Elsewhere in the State".

recording 2022
Recording - December 2022 SDMMP Annual End-of-Year Management and Monitoring Coordination Meeting
Lead author: Winston Vickers
Recording for the December 14, 2022 Annual End-of-Year SDMMP Mgmt. and Mon. Coordination Meeting.

report 2017
Mountain Lion (Puma concolor) Connectivity in the North San Diego County Multi-species Conservation Plan Area
Lead author: Winston Vickers
Mountain lions (Puma concolor, puma, cougars) are top carnivores and important ecological regulators that roam widely throughout the San Diego County landscape. Puma concolor is a named species in regional conservation plans. Because of the extensive areas required by each mountain lion, multiple Natural Conservation Community Planning (NCCP) areas are often utilized by a single individual. Thus, connectivity within and between NCCPs is important for long-term health and persistence of mountain lions in the landscape, and proper NCCP function. In addition to the currently approved NCCP areas in Southern California, San Diego County is in advanced stages of preparing a conservation preserve design for its North County Multiple Species Conservation Program (NCMSCP). This research project uniquely combined camera, GPScollar, and mortality data with state of the art genetic analyses and modeling, and an expert workshop, to produce the most comprehensive assessment to date of mountain lion habitat use and connectivity within, and adjacent to, the NCMSCP area.

report 2014
Mountain Lion Connectivity Study Final Report
Lead author: Winston Vickers
This assessment of mountain lion use of core conserved lands and linkages in western San Diego County (Figures 2 – 4, Tables 1 and 2) was undertaken by the UC Davis Wildlife Health Center as a part of its ongoing Southern California Mountain Lion project. GPS-collaring of mountain lions was undertaken in order to acquire location and movement data from individual lions utilizing core conserved areas and linkages that have been designated by the county. Certain cores and linkages were not judged by experts advising the county to be likely to accommodate regular use by mountain lions (primarily those cores west of I-15), thus those areas were not a focus of this study. However, some trail camera monitoring was done west of I-15 to evaluate the validity of this expectation.

report 2017
Appendix B - Mountain Lion (Puma concolor) Connectivity in the North San Diego County Multi-Species Conservation Plan Area, and Assessment of Mountain Lion Habitat Use and Connectivity in Northern San Diego and Southern Riverside and Orange Counties
Mountain lions (Puma concolor, puma, cougars) are top carnivores and important ecological regulators that roam widely throughout the San Diego County landscape. Puma concolor is a named species in regional conservation plans. Because of the extensive areas required by each mountain lion, multiple Natural Conservation Community Planning (NCCP) areas are often utilized by a single individual. Thus, connectivity within and between NCCPs is important for long-term health and persistence of mountain lions in the landscape, and proper NCCP function. In addition to the currently approved NCCP areas in Southern California, San Diego County is in advanced stages of preparing a conservation preserve design for its North County Multiple Species Conservation Program (NCMSCP). This research project uniquely combined camera, GPS-collar, and mortality data with state of the art genetic analyses and modeling, and an expert workshop, to produce the most comprehensive assessment to date of mountain lion habitat use and connectivity within, and adjacent to, the NCMSCP area. This study uniquely combined camera, GPS location, and mortality data from mountain lions in the region, with state of the art genetic analyses, advanced habitat and movement modeling, and expert opinion to provide as complete an assessment as has been done to date of the factors that affect mountain lion persistence in the NCMSCP and surrounding NCCP areas. The research team’s focus was to provide key information about mountain lion movement and wildlife connectivity that is currently lacking at puma-specific scales in the NCMSCP and adjacent NCCP areas in order to assist in prioritization of habitat for conservation of this species and others. The team also focused on informing highway planners about best locations for wildlife crossing improvements for highways in the area.

report 2003
CBI 2003 MSCP Linkage Monitoring Review
The focus of this study was on regional habitat linkage monitoring locations for tracking corridor use by large mammals (i.e., deer, coyote, bobcat, mountain lion) as part of the MSCP biological monitoring program. CBI identified chokepoints within linkages that serve as regional movement corridors for large mammals, both within the MSCP preserve system and to other NCCP subregions.

report 2010
Effects of large-scale wildfire on carnivores in San Diego County, California
Lead author: Greta Turschak
We investigated the role of large-scale wildfires on the relative abundance of carnivores at two study areas within San Diego County of southern California, 1) Santa Ysabel Open Space Preserve and 2) Rancho Jamul Ecological Reserve-Hollenbeck Canyon Wildlife Area. In October and November of 2003, large-scale fires burned approximately 130,000 ha of San Diego County. To assess fire impacts on local carnivore communities, we collected data using two sampling techniques, 1) track surveys with baited scent stations and 2) remotely triggered camera stations. Sampling prior to the fires was conducted between May 2001 and June 2003, while post-burn sampling was conducted between August 2006 and September 2007. We calculated the relative abundance of carnivore species for each track transect and camera station, comparing pre-burn and post-burn abundance indices. Fifteen medium to large mammal species were detected across Santa Ysabel and Rancho Jamul at track transects and camera stations. We detected 11 native species including mountain lion (Puma concolor), mule deer (Odocoileus hemionus), coyote (Canis latrans), bobcat (Felis rufus), badger (Taxidea taxus), gray fox (Urocyon cinereoargenteus), raccoon (Procyon lotor), striped skunk (Mephitis mephitis), spotted skunk (Spilogale gracilis), opossum (Didelphis virginiana), and long-tailed weasel (Mustela frenata). We also detected four species typically associated with humans including, domestic cow (Bos taurus), domestic horse (Equus caballus), domestic dog (Canis familiaris), and domestic cat (Felis catus). Ten of the native species (badger excluded) and two human-associated species (domestic horse and domestic dog) were documented within both study sites. Within Santa Ysabel and Rancho Jamul, we found little evidence that the 2003 wildfires affected the relative abundance of the carnivore species for which we gathered sufficient data. Most of the species we studied seemed capable of persisting in the patchwork of unburned and burned habitats resulting from these wildfires. In addition, the effects of the fires were likely short term for most carnivore species. We did not begin post-burn monitoring until nearly three years after the wildfires of 2003, by which time we likely missed the more dramatic immediate responses to wildfire. Overall, we suspect the indirect effects of wildfires, such as changes in habitat suitability and predator-prey dynamics, were largely responsible for the mi

report 2018
Appendix A - Assessment of Wildlife Crossing Sites for the Interstate 15 and Highway 101 Freeways in Southern California
Roads can cause significant mortality for wildlife, but large roads like freeways can also form major barriers to wildlife movement and gene flow. Freeways are ubiquitous in southern California, and two freeways, Interstate 15 and U.S. 101, have been found to be barriers to wildlife passage and gene exchange, especially for mountain lions, between the Santa Ana Mountains and the Palomar Mountains and other mountains to the east (separated by Interstate 15), and between the Santa Monica Mountains and the Simi Hills, Santa Susana Mountains, and others to the north (separated by the 101 Freeway). We used two sources of information with the goal of bridging the gap between connectivity science and conservation practice. In early 2015 we engaged an independent panel of connectivity experts to evaluate possible locations and concepts for wildlife crossings along stretches of both freeways. We also developed and implemented an evaluation tool based on landscape characteristics and wildlife data to help prioritize locations for wildlife crossing infrastructure. The experts were asked to evaluate stretches of each freeway where wildlife studies have indicated that some connectivity potential remains due to the presence of natural habitat on both sides of the road, but where new or enhanced structures are likely required to restore lost connectivity. Multiple specific sites were examined along these stretches of each freeway. For I-15, both the Landscape and Expert scoring indicated that retention and enhancement of function under the Temecula Creek Bridge, and construction of a new under or overpass south of the bridge, were both likely needed for long term connectivity. For the 101 Freeway, the Landscape and Expert scoring both strongly concluded that West Liberty Canyon is the best location for a new wildlife crossing structure, with several other locations being sites where enhancements or new construction could serve the role of providing secondary crossings. The experts indicated that an overpass, over both 101 and the parallel Agoura Rd, was the best option here to provide connectivity for a range of species. The experts agreed that accompanying measures, such as effective wildlife fencing to funnel animals to crossing points and appropriate vegetative cover on and near structures were also important. They also recommended that, over the long term, more than one crossing structure should be enhanced or created for each linkage to assure sufficient movement of

report 2002
Wildlife Corridor Monitoring Study for the Multiple Species Conservation Program
Monitoring species use of habitat linkages and wildlife corridors is one component of the MSCP Biological Monitoring Plan (Ogden 1996). The monitoring plan was developed to document compliance with the MSCP, measure the effectiveness of the conservation program, and inform adaptive management decisions. This study was designed to address the following questions: Are the wildlife corridors identified in the subarea plans functional? What large mammals (deer, mountain lion, bobcat, coyote) and mesopredators use the linkages? What potential constraints to animal movement exist in these areas? Where are habitat restoration or other management actions needed to facilitate animal movement? Does the Scripps-Poway Parkway underpass function effectively for wildlife movement? What survey methods are most efficient in identifying corridor use and evaluating corridor function for each target species?

report 2002
CBI 2002 MSCP Wildlife Corridor Monitoring Study
The MSCP preserve was designed to maintain connections between core habitat areas, including linkages between coastal lagoons and more inland habitats, and linkages between different watersheds. In addition to allowing for demographic and genetic exchange by all species between core preserve areas, linkages are intended to allow larger predators (mountain lions, coyotes, and bobcats) to move among conserved habitat blocks and reach coastal habitats. This study was designed to address the following questions: • Are the wildlife corridors identified in the subarea plans functional? • What large mammals (deer, mountain lion, bobcat, coyote) and mesopredators use the linkages? • What potential constraints to animal movement exist in these areas? • Where are habitat restoration or other management actions needed to facilitate animal movement? • Does the Scripps-Poway Parkway underpass function effectively for wildlife movement? • What survey methods are most efficient in identifying corridor use and evaluating corridor function for each target species?

report 2010
Effects of large-scale wildfire on carnivores in San Diego County, California
Lead author: Greta Turschak
We investigated the role of large-scale wildfires on the relative abundance of carnivores at two study areas within San Diego County of southern California, 1) Santa Ysabel Open Space Preserve and 2) Rancho Jamul Ecological Reserve-Hollenbeck Canyon Wildlife Area. In October and November of 2003, large-scale fires burned approximately 130,000 ha of San Diego County. To assess fire impacts on local carnivore communities, we collected data using two sampling techniques, 1) track surveys with baited scent stations and 2) remotely triggered camera stations. Sampling prior to the fires was conducted between May 2001 and June 2003, while post-burn sampling was conducted between August 2006 and September 2007. We calculated the relative abundance of carnivore species for each track transect and camera station, comparing pre-burn and post-burn abundance indices. Fifteen medium to large mammal species were detected across Santa Ysabel and Rancho Jamul at track transects and camera stations. We detected 11 native species including mountain lion (Puma concolor), mule deer (Odocoileus hemionus), coyote (Canis latrans), bobcat (Felis rufus), badger (Taxidea taxus), gray fox (Urocyon cinereoargenteus), raccoon (Procyon lotor), striped skunk (Mephitis mephitis), spotted skunk (Spilogale gracilis), opossum (Didelphis virginiana), and long-tailed weasel (Mustela frenata). We also detected four species typically associated with humans including, domestic cow (Bos taurus), domestic horse (Equus caballus), domestic dog (Canis familiaris), and domestic cat (Felis catus). Ten of the native species (badger excluded) and two human-associated species (domestic horse and domestic dog) were documented within both study sites. Within Santa Ysabel and Rancho Jamul, we found little evidence that the 2003 wildfires affected the relative abundance of the carnivore species for which we gathered sufficient data. Most of the species we studied seemed capable of persisting in the patchwork of unburned and burned habitats resulting from these wildfires. In addition, the effects of the fires were likely short term for most carnivore species. We did not begin post-burn monitoring until nearly three years after the wildfires of 2003, by which time we likely missed the more dramatic immediate responses to wildfire. Overall, we suspect the indirect effects of wildfires, such as changes in habitat suitability and predator-prey dynamics, were largely responsible for the minor changes we observed